PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 857917
Common NameARALYDRAFT_657361
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family C2H2
Protein Properties Length: 431aa    MW: 47309 Da    PI: 10.063
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
857917genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE patternPS000280197218IPR007087Zinc finger, C2H2
SuperFamilySSF563993.64E-24220429No hitNo description
Gene3DG3DSA:3.90.228.101.4E-10221428IPR012317Poly(ADP-ribose) polymerase, catalytic domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003950Molecular FunctionNAD+ ADP-ribosyltransferase activity
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 431 aa     Download sequence    Send to blast
MEASSTRSEK KKKKTIQREN TDIQKIKKLP SVWFSLKKSL PCKSDVSDVH IPRSRKELTP  60
ISTKRTTTTS GGGVGGRSGC SRSIANLKDV IHGNQRHLEK PLCSSPRSIG SSEFLNPITH  120
DVIFSNSTCE LKITAAGATE FVGTLTPGTP VNYSSSRRSQ ASRKASSLDK EGLGFHQSRR  180
ERDRDSAING DNSSVSCHKC GEKFSKLEAA EAHHLTKHAV TELMEGDSSR KIVEIICRTS  240
WLKTENQGGR IDRILKVHNM QKTLARFEEY RDTVKIRASK LQKKHPRCIA DGNELLRFHG  300
TTVACALGIN GSTSLCSSEK CCVCRIIRNG FSAKREMNNG IGVFTASTSE RAFESIVIDD  360
GGGSDRKALI VCRVIAGRVH RPVENLEEMG GLLNGFDSLA GKVGLYTNVE ELYLLNSRAL  420
LPCFVLICKR *
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB4937030.0AB493703.1 Arabidopsis thaliana At4g27240 mRNA for hypothetical protein, partial cds, clone: RAAt4g27240.
GenBankBT0300590.0BT030059.1 Arabidopsis thaliana At4g27240 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002869573.10.0predicted protein
TrEMBLD7MEI00.0D7MEI0_ARALL; Predicted protein
STRINGAl_scaffold_0007_14160.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM3553812
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G27240.10.0C2H2 family protein